TACK: A Novel TArgeting Chimeras Knowledge Dataset
Published:
3,514 PROTACs and 6,561 degradation endpoints in one standardised dataset, plus the statistical benchmark code used to evaluate degradation activity models.
Code Portfolio - Projects
More projects will be added in the near future, stay tuned! If you can't wait, please refer to my GitHub for all of my projects.PROTAC-Splitter
Published:
Automated decomposition of a PROTAC into E3 ligand, linker and warhead, via a Transformer sequence-to-sequence model and a graph-based XGBoost model.
PROTAC-Degradation-Predictor
Published:
An open, reproducible degradation activity model that outperforms DeepPROTACs at a fraction of the complexity, trained on a curated PROTAC-DB / PROTAC-Pedia dataset.
Finite Element Method (FEM) using Python and CUDA
Published:
Implementing the FEM algorithm from scratch in Numba and CuPy.
High Performance Computing Course
Published:
A series of assignments on OpenMP, Threads, and OpenCL.
Image Analysis Course
Published:
MATLAB projects on SIFT, CNNs, image registration, and triangulation.
Bioinformatics Course
Published:
Implementing sequence alignment, domain assignment, main chain tracing, and steric overlaps detection.
Mapping Multiple LSTM Models on FPGAs
Published:
A framework that co-optimises multiple LSTM models for FPGA deployment via SVD-based approximation and structured pruning, reaching 3x to 5x speedups at equal accuracy loss.